K12b aDNA (Dodecad K12b)

[Salento]

Salento: Thanks for the coordinates, again great work. How are things Jovialis and Duarte (long time since we have crossed paths, hope w all is well).

You're Welcome PT

 

[Salento]

Thought of something cool, we can possibly update the AADR with new samples that didn't make the cut yet. Which would be extraordinary. We would just need the raw data files in 23andme format. Then with plink we could follow the procedure I listed in the Admixtools2 tutorial. I'm pretty sure the BAM files are already aligned to HG19.

Hi Jovialis, here is a link to the 1240K plink Collegno_2024, I tested it by merging it with the new AADR that I previously converted into plink format and it worked.

collegno_2024

MediaFire is a simple to use free service that lets you put all your photos, documents, music, and video in a single place so you can access them anywhere and share them everywhere.

www.mediafire.com

 

[Duarte]

Dodecad K12b PCA plot - Modern (Original Samples from Dodecad Project, 1000 Genomes, HGDP and Behar) and Ancient (Eupedia team: Salento et al)

 

[Duarte]

Dodecad K12b PCA plot - Modern (Original Samples from Dodecad Project, 1000 Genomes, HGDP and Behar) and Ancient (Eupedia team: Salento et al)

 

[HereToLearn]

I have downloaded my raw data. What can I do with them? I see you guys are quite familiar with these calculators...

My results, I hope I did it right.

Dodecad K12b
Ancient Populations - Dodecad

1. I3313 Balkans Bronzeage 60.20%
2. R473 Iron Age Civitavecchia 14.60%
3. CL36 11.80%
4. I3499 Nwbalkans Pannonianplain Vucedol EN 7.80%
5. I4329 Mallorca EBA Cova Des Moro Mallorca Spain 5.00%
6. I2478 Bronze Age Beaker Northern Italy 0.60%

 

[Duarte]

I have downloaded my raw data. What can I do with them? I see you guys are quite familiar with these calculators...

My results, I hope I did it right.

Dodecad K12b
Ancient Populations - Dodecad

1. I3313 Balkans Bronzeage 60.20%
2. R473 Iron Age Civitavecchia 14.60%
3. CL36 11.80%
4. I3499 Nwbalkans Pannonianplain Vucedol EN 7.80%
5. I4329 Mallorca EBA Cova Des Moro Mallorca Spain 5.00%
6. I2478 Bronze Age Beaker Northern Italy 0.60%

Hello HereToLearn
I could see that you have your K12b coordinates. If yet not, just follow these steps to obtain it. Upload your raw data to the Gedmatch tool. Dodecad K12b coordinates have 12 numerical positions separated by commas. For example, this is the Dodecad K12b result for Kit F999918 which contains the raw data for the Loschbour man

The Loschbour coordinates would be:

Loschbour _Dodecad_K12b,0,0,0,0,30.57,68,87,0,0,0,0.35,0,0.21

Note that where is no data (“-“), it is entered as (“0”).

Once you have obtained your Dodecad K12b coordinates from GEDMATCH you can compare yourself to ancient populations using as a source individuals from the file in the link below, where are the coordinates produced for ancestral individuals here on Eupedia through the statistical admixture and PCA tools provided by Vahaduo.

k12b ancient all samples news Salento.docx

docs.google.com

 

[Duarte]

Vahaduo K12b - PCA 3D

 

[tk'es]

hi there

do you have a notepad version of that coordinate list? I've made several attempts to get my results in admixture studio tool designed by DNA Genics, but it constantly keeps calculating extremely long and it starts freezing