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Reconstructing past human genetic variation with ancient DNA.

kingdavid said:
thanks for sharing ;)
surprising so he was under e-z830>v1515 and not under e-z830>pf1962

the great pribislav look at him kudos to him (y)
:

NUE001; 2855-2570 BC; Nuerat, Minya governate, Upper Egypt; Old_Kingdom_EBA; E-Z830>CTS10880>Y139640>Y139639>Y141317>Y141495>FT151581>pre-Y222180
Click to expand...
I guess E-V1515 represents the Kemetic branch of the Afro-Asiatic family and E-PF1962 represents the Semitic branch. But how come I have never heard of this branch before?

I wonder which country has the highest percentage % of E-V1515? Aside from that, since the Nuerat sample is downstream of E-Z830, we can confirm that the first Ancient Egyptians came from the Natufian Culture of the Southern Levant, modern day Israel.
 
Khopesh_Wielder said:
I guess E-V1515 represents the Kemetic branch of the Afro-Asiatic family and E-PF1962 represents the Semitic branch. But how come I have never heard of this branch before?

I wonder which country has the highest percentage % of E-V1515? Aside from that, since the Nuerat sample is downstream of E-Z830, we can confirm that the first Ancient Egyptians came from the Natufian Culture of the Southern Levant, modern day Israel.
Click to expand...

very likely

we can confirm that autosomal speaking the ancient Egyptians had huge middle eastern component to them
when in g25 davidski calculator
i take out levant ppnb which in himself is a mixture of natufian+ antolia barcin
and tur tepecik also
and put a Natufian instead

TUR_Barcin_N,0.1175998,0.180118,0.0035312,-0.101158,0.0510443,-0.0483875,-0.0043582,-0.0069334,0.0362287,0.0807473,0.0079718,0.0118803,-0.0234545,0.0004691,-0.0419807,-0.0101913,0.0233091,0.0019866,0.0136954,-0.0097489,-0.0142249,0.0057723,-0.0041232,-0.0031658,-0.0043437
BRA_LapaDoSanto_9600BP,0.050765,-0.3095332,0.1206032,0.098515,-0.1156522,-0.017626,-0.284645,-0.3400012,-0.0136212,-0.0184422,0.002241,-0.003267,0.0004162,0.017478,-0.0065688,0.0064438,0.006493,-0.001267,0.0026898,0.003727,-0.0010482,0.007963,-0.002662,-0.0043378,0.001413
Dinka,-0.577083,0.0507765,-0.0003773,-0.0075098,-0.0053855,-0.0016735,-0.0176848,0.0204222,0.081145,-0.0969495,-0.02107,0.022742,-0.0383172,-0.0011698,0.0101452,-0.021347,0.0186125,-0.0094382,0.0241968,-0.0241678,0.002402,0.003308,0.001479,0.0009038,0.0096995
ETH_4500BP,-0.511066,0.043668,0.000754,0.000969,-0.00277,-0.011435,0.050997,-0.045229,0.089172,-0.087838,-0.012991,-0.002997,-0.031219,0.000688,0.02158,-0.029965,0.027772,0.039273,0.00176,-0.009004,0.000374,0.006183,-0.003451,-0.00241,-0.000838
Gambian,-0.6064875,0.0671942,0.0197362,0.0114665,0.0021028,0.0055777,-0.0358392,0.0387677,-0.0317353,0.0241463,0.0054132,-0.0036467,0.0162287,-0.0009865,0.011016,-0.0153362,0.009692,-0.0011823,-0.002116,-0.0032307,-0.001643,-0.0018137,0.0043958,-0.0001005,0.001377
Han,0.0206952,-0.4507105,-0.0082967,-0.0651579,0.0780846,0.0374475,0.0029055,-0.004804,-0.0150232,-0.0031146,-0.0495875,-0.0070573,0.0072707,-0.0081072,-0.0043305,0.0012535,0.0017542,-0.0008638,-0.0020455,-0.0102206,0.0122397,0.0069582,0.0141063,-0.0012925,-0.0022315
IRN_Ganj_Dareh_N,0.0430252,0.0664158,-0.1550722,0.0047158,-0.122669,0.0235384,0.017109,-0.0011998,-0.082546,-0.0544158,-0.0028258,-0.0016186,0.0044896,-0.0062756,0.0316498,0.0561384,-0.0054242,0.0068664,0.0136508,-0.0334162,0.00856,-0.028836,-0.0110678,-0.039331,0.0222254
IRN_Shahr_I_Sokhta_BA2_I8728,0.033009,-0.081242,-0.184789,0.125325,-0.09848,0.06777,0.002585,0.007615,0.03661,0.02606,-0.002273,0.010041,-0.005798,0.006744,0.004479,0.001326,0.008605,0.001267,0.00352,0.001376,0.003743,-0.004946,-0.00037,-0.00253,-0.007305
Jarawa,-0.0219821,-0.2430289,-0.1324164,0.0986968,0.0323713,-0.0045841,-0.01012,0.0065044,0.0546974,0.0238044,0.0228054,0.0027349,-0.0041532,0.0103562,-0.0108067,-0.0114441,0.0094529,-0.0019082,-0.0062221,0.0286778,-0.0046401,0.0111366,-0.0123402,0.0022668,0.0049844
Kura-Araxes_ARM_Kaps,0.1013025,0.133034,-0.07071,-0.043605,-0.0498555,-0.0092035,0.008108,-0.011653,-0.066368,-0.01631,0.0030855,0.011015,-0.019846,0.005849,0.0042075,-0.0102095,-0.0001305,-0.003927,-0.001697,0.0032515,0.003494,-0.000247,-0.0036975,-0.0090975,-0.0030535
Israel_Natufian_d:I1072_enhanced_d,0.037562,0.155376,-0.023381,-0.137276,0.043085,-0.083388,-0.017861,-0.012923,0.124555,0.015672,0.030042,-0.020382,0.082209,0,0.003257,-0.012861,-0.008866,-0.010515,-0.017221,0.021385,0.015348,0.001855,0.008504,0.003735,0
MAR_Taforalt,-0.189857,0.0814452,-0.0242866,-0.085595,0.027636,-0.0552202,-0.0705968,0.0184146,0.155397,0.003499,0.0209156,-0.0318316,0.0747168,-0.0513334,0.0711988,-0.0363032,0.0052676,-0.066106,-0.1424162,0.0389938,-0.0376836,-0.1255322,0.0730118,-0.0137606,0.0164534
Nganassan,0.0476917,-0.4066181,0.1557885,0.0023902,-0.1594452,-0.0882129,0.0285066,0.0433367,0.0310876,0.0128477,0.1028569,0.0094115,-0.0040734,-0.0261619,-0.0219731,-0.0123307,-0.0010952,0.0134165,0.0268365,-0.0008505,0.0431363,-0.0118954,0.0336096,0.0003977,0.0135556
WHG,0.1246365,0.116278,0.184789,0.189279,0.1546445,0.0464355,0.0131605,0.0372675,0.0890705,0.017768,-0.0153455,-0.015811,0.0159065,-0.0030275,0.053338,0.0582065,0.00502,0.016343,-0.0093015,0.055589,0.0944585,0.0111905,-0.049607,-0.160866,0.0170045
Yamnaya_RUS_Samara,0.1255849,0.089028,0.0426986,0.1153479,-0.0287232,0.0450564,0.0036033,-0.0025642,-0.0559032,-0.0728943,0.0018222,3.32e-05,-0.0026924,-0.0233041,0.0366141,0.0157633,-0.0012316,-0.0017879,-0.0038408,0.0137704,-0.0031749,0.0007557,0.0110649,0.0186102,-0.004537
Yoruba,-0.6300625,0.0625011,0.022113,0.0167079,0.0005035,0.0124741,-0.044417,0.0477673,-0.0488813,0.0327694,0.0046205,0.0007904,0.0230561,0.0009509,0.0125232,-0.0096067,0.0070763,0.0004491,0.006022,-0.00299,0.0015542,0.0023156,-0.0017592,-0.0004711,-0.0004246


this is what he scores:


this is what he scores:

69% Israel_Natufian
14.0% Kura_Araxes
8.2% IRN_Ganj_Dareh
4.8% Dinka
2.6% MAR_Taforlat
1.4% han
 
Last edited:
Khopesh_Wielder said:
I guess E-V1515 represents the Kemetic branch of the Afro-Asiatic family and E-PF1962 represents the Semitic branch. But how come I have never heard of this branch before?

I wonder which country has the highest percentage % of E-V1515? Aside from that, since the Nuerat sample is downstream of E-Z830, we can confirm that the first Ancient Egyptians came from the Natufian Culture of the Southern Levant, modern day Israel.
Click to expand...

very likely

we can confirm that autosomal speaking the ancient Egyptians had huge middle eastern component to them
when in g25 davidski calculator
i take out levant ppnb which in himself is a mixture of natufian+ antolia barcin
and take out Tur tepecik also
and put a Natufian instead

TUR_Barcin_N,0.1175998,0.180118,0.0035312,-0.101158,0.0510443,-0.0483875,-0.0043582,-0.0069334,0.0362287,0.0807473,0.0079718,0.0118803,-0.0234545,0.0004691,-0.0419807,-0.0101913,0.0233091,0.0019866,0.0136954,-0.0097489,-0.0142249,0.0057723,-0.0041232,-0.0031658,-0.0043437
BRA_LapaDoSanto_9600BP,0.050765,-0.3095332,0.1206032,0.098515,-0.1156522,-0.017626,-0.284645,-0.3400012,-0.0136212,-0.0184422,0.002241,-0.003267,0.0004162,0.017478,-0.0065688,0.0064438,0.006493,-0.001267,0.0026898,0.003727,-0.0010482,0.007963,-0.002662,-0.0043378,0.001413
Dinka,-0.577083,0.0507765,-0.0003773,-0.0075098,-0.0053855,-0.0016735,-0.0176848,0.0204222,0.081145,-0.0969495,-0.02107,0.022742,-0.0383172,-0.0011698,0.0101452,-0.021347,0.0186125,-0.0094382,0.0241968,-0.0241678,0.002402,0.003308,0.001479,0.0009038,0.0096995
ETH_4500BP,-0.511066,0.043668,0.000754,0.000969,-0.00277,-0.011435,0.050997,-0.045229,0.089172,-0.087838,-0.012991,-0.002997,-0.031219,0.000688,0.02158,-0.029965,0.027772,0.039273,0.00176,-0.009004,0.000374,0.006183,-0.003451,-0.00241,-0.000838
Gambian,-0.6064875,0.0671942,0.0197362,0.0114665,0.0021028,0.0055777,-0.0358392,0.0387677,-0.0317353,0.0241463,0.0054132,-0.0036467,0.0162287,-0.0009865,0.011016,-0.0153362,0.009692,-0.0011823,-0.002116,-0.0032307,-0.001643,-0.0018137,0.0043958,-0.0001005,0.001377
Han,0.0206952,-0.4507105,-0.0082967,-0.0651579,0.0780846,0.0374475,0.0029055,-0.004804,-0.0150232,-0.0031146,-0.0495875,-0.0070573,0.0072707,-0.0081072,-0.0043305,0.0012535,0.0017542,-0.0008638,-0.0020455,-0.0102206,0.0122397,0.0069582,0.0141063,-0.0012925,-0.0022315
IRN_Ganj_Dareh_N,0.0430252,0.0664158,-0.1550722,0.0047158,-0.122669,0.0235384,0.017109,-0.0011998,-0.082546,-0.0544158,-0.0028258,-0.0016186,0.0044896,-0.0062756,0.0316498,0.0561384,-0.0054242,0.0068664,0.0136508,-0.0334162,0.00856,-0.028836,-0.0110678,-0.039331,0.0222254
IRN_Shahr_I_Sokhta_BA2_I8728,0.033009,-0.081242,-0.184789,0.125325,-0.09848,0.06777,0.002585,0.007615,0.03661,0.02606,-0.002273,0.010041,-0.005798,0.006744,0.004479,0.001326,0.008605,0.001267,0.00352,0.001376,0.003743,-0.004946,-0.00037,-0.00253,-0.007305
Jarawa,-0.0219821,-0.2430289,-0.1324164,0.0986968,0.0323713,-0.0045841,-0.01012,0.0065044,0.0546974,0.0238044,0.0228054,0.0027349,-0.0041532,0.0103562,-0.0108067,-0.0114441,0.0094529,-0.0019082,-0.0062221,0.0286778,-0.0046401,0.0111366,-0.0123402,0.0022668,0.0049844
Kura-Araxes_ARM_Kaps,0.1013025,0.133034,-0.07071,-0.043605,-0.0498555,-0.0092035,0.008108,-0.011653,-0.066368,-0.01631,0.0030855,0.011015,-0.019846,0.005849,0.0042075,-0.0102095,-0.0001305,-0.003927,-0.001697,0.0032515,0.003494,-0.000247,-0.0036975,-0.0090975,-0.0030535
Israel_Natufian_d:I1072_enhanced_d,0.037562,0.155376,-0.023381,-0.137276,0.043085,-0.083388,-0.017861,-0.012923,0.124555,0.015672,0.030042,-0.020382,0.082209,0,0.003257,-0.012861,-0.008866,-0.010515,-0.017221,0.021385,0.015348,0.001855,0.008504,0.003735,0
MAR_Taforalt,-0.189857,0.0814452,-0.0242866,-0.085595,0.027636,-0.0552202,-0.0705968,0.0184146,0.155397,0.003499,0.0209156,-0.0318316,0.0747168,-0.0513334,0.0711988,-0.0363032,0.0052676,-0.066106,-0.1424162,0.0389938,-0.0376836,-0.1255322,0.0730118,-0.0137606,0.0164534
Nganassan,0.0476917,-0.4066181,0.1557885,0.0023902,-0.1594452,-0.0882129,0.0285066,0.0433367,0.0310876,0.0128477,0.1028569,0.0094115,-0.0040734,-0.0261619,-0.0219731,-0.0123307,-0.0010952,0.0134165,0.0268365,-0.0008505,0.0431363,-0.0118954,0.0336096,0.0003977,0.0135556
WHG,0.1246365,0.116278,0.184789,0.189279,0.1546445,0.0464355,0.0131605,0.0372675,0.0890705,0.017768,-0.0153455,-0.015811,0.0159065,-0.0030275,0.053338,0.0582065,0.00502,0.016343,-0.0093015,0.055589,0.0944585,0.0111905,-0.049607,-0.160866,0.0170045
Yamnaya_RUS_Samara,0.1255849,0.089028,0.0426986,0.1153479,-0.0287232,0.0450564,0.0036033,-0.0025642,-0.0559032,-0.0728943,0.0018222,3.32e-05,-0.0026924,-0.0233041,0.0366141,0.0157633,-0.0012316,-0.0017879,-0.0038408,0.0137704,-0.0031749,0.0007557,0.0110649,0.0186102,-0.004537
Yoruba,-0.6300625,0.0625011,0.022113,0.0167079,0.0005035,0.0124741,-0.044417,0.0477673,-0.0488813,0.0327694,0.0046205,0.0007904,0.0230561,0.0009509,0.0125232,-0.0096067,0.0070763,0.0004491,0.006022,-0.00299,0.0015542,0.0023156,-0.0017592,-0.0004711,-0.0004246


this is what he scores:

69% Israel_Natufian
14.0% Kura_Araxes
8.2% IRN_Ganj_Dareh
4.8% Dinka
2.6% MAR_Taforlat
1.4% han
 
Last edited:
Using these samples:

Turkey_Catalhoyuk_N_Ceramic.SG,0.08992,0.175687,-0.015085,-0.131785,0.036007,-0.061914,-0.011281,-0.025153,0.022702,0.056311,0.021435,0.007493,-0.003419,-0.008945,-0.040852,-0.035004,0.026077,0.009628,0.00264,0.005628,-0.019341,0.008656,0.000493,0.006989,0.001796
Russia_Samara_EBA_Yamnaya,0.1258378,0.0892539,0.0429079,0.1154556,-0.0278684,0.0446846,0.0044911,-0.0029487,-0.0548579,-0.0729957,0.0018583,0.0003497,-0.0016518,-0.0236099,0.0372629,0.015734,1.00E-07,-0.001478,-0.001704,0.0125059,-0.0031197,0.001374,0.0112292,0.0184362,-0.0045237
Israel_Natufian,0.020488,0.131003,-0.039221,-0.141475,0.027082,-0.0753,-0.017861,-0.025845,0.102671,-0.004556,0.030042,-0.020682,0.069573,-0.000963,0.020222,0.028772,-0.012647,0.008868,-0.021117,0.04252,-0.004243,-0.002597,-0.011955,-0.006386,0.011735
Luxembourg_Loschbour.DG,0.130897,0.109677,0.203645,0.198,0.162492,0.059125,0.015041,0.038075,0.100217,0.016219,-0.015427,-0.017235,0.019921,-0.001239,0.061346,0.07067,0.002608,0.007348,-0.008925,0.065406,0.117543,0.010387,-0.049422,-0.173639,0.019519
Iran_GanjDareh_N,0.0430252,0.0674312,-0.153488,0.0055556,-0.1239616,0.0243752,0.015464,0.000277,-0.081605,-0.05427,-0.0032476,-0.0016186,0.0053816,-0.0078446,0.0319486,0.056775,-0.0058154,0.007576,0.014405,-0.0327406,0.0076614,-0.0300476,-0.0109198,-0.0387768,0.0229438
Georgia_Kotias.SG,0.08992,0.103584,-0.088246,-0.004845,-0.089555,0.020359,0.023266,-0.001154,-0.130486,-0.080002,-0.007632,0.024878,-0.052626,0.007707,0.026465,-0.0297,0.027772,-0.010769,-0.023757,0.037518,0.030945,-0.006677,0.0053,-0.020846,0.001557
Libya_Takarkori_N:TKH001_tr.SG.TW,-0.458707,0.076165,-0.002263,-0.028101,0.01231,-0.017291,-0.057578,0.034152,0.07506,-0.017859,-0.001786,0.006145,0.021556,-0.027525,0.03203,-0.02201,0.012126,-0.032179,-0.041229,0.003502,-0.014724,-0.043526,0.026991,-0.005181,0.002754
Ethiopia_4500BP,-0.517895,0.040621,-0.003017,-0.000646,-0.002154,-0.009761,0.057813,-0.049383,0.089172,-0.084375,-0.013803,-0.014987,-0.036571,-0.001651,0.02348,-0.030628,0.022817,0.041047,0.005279,-0.008629,0.00262,0.001855,-0.006039,0.001205,0.002515
Cameroon_SMA,-0.6075308,0.0553465,0.0153678,0.0260015,-0.002385,0.00251,0.1367175,-0.1052838,0.0087948,-0.001777,0.000812,-0.0306102,-0.023674,-0.000757,0.0041735,-0.0019558,0.008475,0.0187182,-0.0059392,-0.0026888,-0.0018405,-0.0009275,-0.0029272,-0.0018375,-0.0045202


1745075674042.png


I have yet to see qpAdm results where any of the ancient Egyptians, including NUE001, are modeled with Takarkori. The purpose would be to uncover whether some or all of the SSA is actually this ANA like Green Sahara component. It's something I have been wondering about.
 
Did another G25 model with these populations:

Jordan_PPNC,0.067156,0.170609,-0.021496,-0.148581,0.026466,-0.071954,-0.013631,-0.018692,0.080378,0.034443,0.007795,-0.012739,0.037611,-0.001789,-0.016422,0.00716,-0.001565,-0.008488,-0.011941,0.012131,-0.007112,0.01051,0.001972,0.001566,0.002275
Luxembourg_Loschbour.DG,0.130897,0.109677,0.203645,0.198,0.162492,0.059125,0.015041,0.038075,0.100217,0.016219,-0.015427,-0.017235,0.019921,-0.001239,0.061346,0.07067,0.002608,0.007348,-0.008925,0.065406,0.117543,0.010387,-0.049422,-0.173639,0.019519
Iran_GanjDareh_N,0.0430252,0.0674312,-0.153488,0.0055556,-0.1239616,0.0243752,0.015464,0.000277,-0.081605,-0.05427,-0.0032476,-0.0016186,0.0053816,-0.0078446,0.0319486,0.056775,-0.0058154,0.007576,0.014405,-0.0327406,0.0076614,-0.0300476,-0.0109198,-0.0387768,0.0229438
Libya_Takarkori_N:TKH001_tr.SG.TW,-0.458707,0.076165,-0.002263,-0.028101,0.01231,-0.017291,-0.057578,0.034152,0.07506,-0.017859,-0.001786,0.006145,0.021556,-0.027525,0.03203,-0.02201,0.012126,-0.032179,-0.041229,0.003502,-0.014724,-0.043526,0.026991,-0.005181,0.002754
Dinka,-0.577083,0.0507765,-0.0003773,-0.0075098,-0.0053855,-0.0016735,-0.0176848,0.0204222,0.081145,-0.0969495,-0.02107,0.022742,-0.0383172,-0.0011698,0.0101452,-0.021347,0.0186125,-0.0094382,0.0241968,-0.0241678,0.002402,0.003308,0.001479,0.0009038,0.0096995
Ethiopia_4500BP,-0.517895,0.040621,-0.003017,-0.000646,-0.002154,-0.009761,0.057813,-0.049383,0.089172,-0.084375,-0.013803,-0.014987,-0.036571,-0.001651,0.02348,-0.030628,0.022817,0.041047,0.005279,-0.008629,0.00262,0.001855,-0.006039,0.001205,0.002515
Cameroon_SMA,-0.6075308,0.0553465,0.0153678,0.0260015,-0.002385,0.00251,0.1367175,-0.1052838,0.0087948,-0.001777,0.000812,-0.0306102,-0.023674,-0.000757,0.0041735,-0.0019558,0.008475,0.0187182,-0.0059392,-0.0026888,-0.0018405,-0.0009275,-0.0029272,-0.0018375,-0.0045202

1745177107794.png



Third Intermediate Period Egyptians with the same models:

1745177246015.png
 
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