plink

I have been experimenting creating PCAs using PLINK and ChatGPT's ability to utilize Python script. I use a dedicated GPT called Python Samurai, but the regular GPT 4.0 can do it as well. I wanted to exactly replicate the PCAs from studies, however, most of them use smartpca with Eigensoft...

With a big thanks to Maciamo for creating it, we are proud to announce the creation of the Admixtools sub-forum! This thread will be dedicated to the re-creation of qpadm models from academic papers. The object of the thread is to post FAM or Ind files that are modified to replicate a select...

> results$weights # A tibble: 3 × 5 target left weight se z <chr> <chr> <dbl> <dbl> <dbl> 1 Italian_South_ITS7 Steppe_EMBA 0.241 0.0471 5.11 2 Italian_South_ITS7 C_Italian_N 0.551 0.0361 15.3 3 Italian_South_ITS7 CHG_Iran_N 0.209 0.0609...