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pca

  1. Jovialis

    Admixtools Major Update to the Interactive SMARTPCA: aDNA & Modern West Eurasian PCA

    Download New populations added from Germany, France, England, Bulgaria, North Macedonia, and more. Totaling 4,425 individual samples. Convex Hulls added New button that will allow you to prune out unselected populations in the legend, making it easier to present and share projections.
  2. Jovialis

    PCA of Steppe to South Eastern European Genetic Bridge

    PCA demonstration of the genetic bridge between Yamnaya/Catacomb Culture and the ancient populations of Greece, Albania, Northern Macedonia, Bulgaria, and Ukraine.
  3. T

    G25 Global25 LBA-IA PCA

    My PCA of Europe around 1100 BCE to 500 CE. The time period is generally inconsistent (mainly because of Scandinavia), but in Scandinavia there would not have been much genetic change since the Iron Age. Here is the .txt for the PCA: Let me know where you’re clustering on the PCA! (If European...
  4. Jovialis

    Admixtools PCA with PLINK & ChatGPT (Python Samurai)

    I have been experimenting creating PCAs using PLINK and ChatGPT's ability to utilize Python script. I use a dedicated GPT called Python Samurai, but the regular GPT 4.0 can do it as well. I wanted to exactly replicate the PCAs from studies, however, most of them use smartpca with Eigensoft...
  5. Archetype0ne

    G25 G25 3D Display on-line by Vahaduo

    New Tool for 3D display of G25 based PCA posted on Eurogenes by Davidski. Eurogenes blog: https://eurogenes.blogspot.com/2020/...m-vahaduo.html The online tool: https://vahaduo.github.io/3d/g25/ I will shortly post my results.
  6. Jovialis

    GEDMatch Rotating 3D PCA on Gedmatch

    Obviously this is wrong, but why? Is it just a broken feature? I haven't adjusted any of the settings (except making it 1000 resolution in the pic, but it is in the same position normally.) It only seems to work for Eurogenes calculators; they haven't made it for others, to my knowledge.
  7. Jovialis

    Geneplaza Ethnicity Calculator (PCA)

    Has anyone else tried out this app? Here's my results: Global Global with Sub-populations Close up of European populations Italians Italians & Iberians Italians, Iberians, and British Italians, Iberians, British, and "European" Here's a description of the European...
  8. LeBrok

    PCA trends of Europeans and Near Easterners

    There are interesting trends visible on PCA plot. Might be useful in determining historical population movement and mixing.
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